Regulation of microRNAs - H. Grosshans (Landes, 2010) WW.pdf

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Regulation of microRNAs
ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY
Editorial Board:
NATHAN BACK,
State University of New York at Buffalo
IRUN R. COHEN,
The Weizmann Institute of Science
ABEL LAJTHA,
N.S. Kline Institute for Psychiatric Research
JOHN D. LAMBRIS,
University of Pennsylvania
RODOLFO PAOLETTI,
University of Milan
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Volume 700
REGULATION OF MICRORNAS
Helge Großhans
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Regulation of microRNAs
Edited by
Helge Großhans
Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland
Springer Science+Business Media, LLC
Landes Bioscience
Springer Science+Business Media, LLC
Landes Bioscience
Copyright ©2010 Landes Bioscience and Springer Science+Business Media, LLC
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Regulation of microRNAs,
edited by Helge Großhans. Landes Bioscience / Springer Science+Business Media,
LLC dual imprint / Springer series: Advances in Experimental Medicine and Biology.
ISBN: 978-1-4419-7822-6
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Library of Congress Cataloging-in-Publication Data
Regulation of microRNAs / edited by Helge Grosshans.
p. ; cm. -- (Advances in experimental medicine and biology ; v. 700)
Includes bibliographical references and index.
ISBN 978-1-4419-7822-6
1. Small interfering RNA. 2. Genetic regulation. I. Grosshans, Helge. II. Series: Advances in experimental
medicine and biology ; v. 700. 0065-2598
[DNLM: 1. MicroRNAs--genetics. 2. Gene Expression Regulation--genetics. W1 AD559 v.700 2010 / WY 105]
QP623.5.S63R445 2010
572.8’8--dc22
2010038832
PREFACE
When in 2001 the first draft versions of the human genome revealed that there were no
more than 25,000 human genes, much soul searching resulted. How could a complicated
human being develop and function with a gene set not much bigger than that of a worm,
Caenorhabditis elegans?
Although the meaning of ‘gene counts’ is debatable when a single gene can give rise to
a multitude of different gene products (and when in fact much of the ‘inter-genic’ genome
appears to be transcribed), the apparent conundrum highlighted the importance of gene
regulation in making complex organisms. It thus appears particularly appropriate that it
was also in 2001 that microRNAs (miRNAs) were finding their way into the limelight.
These regulatory RNAs, named for their small size of some 22 nucleotides, had been
discovered in 1993 in
C. elegans,
but were initially considered a worm oddity and largely
ignored. It was only when small RNA cloning efforts started to reveal hundreds of different
miRNAs in a typical animal or plant genome that they were widely noticed. Today, it
appears that hardly any cellular or developmental pathway has escaped the control that
miRNAs exert by silencing target mRNAs through an antisense mechanism. Accordingly,
miRNAs dysregulation contributes to numerous diseases, most notably diverse cancers.
Given this pervasiveness and importance of miRNA-mediated gene regulation,
it should come as little surprise that miRNAs themselves are also highly regulated.
However, the recent explosion of knowledge on this topic has been remarkable, providing
a primary motivation for publication of this book. As miRNAs are transcribed by RNA
polymerase II, the enzyme that also generates mRNAs, it was perhaps not unexpected
that miRNA transcription would be subject to regulation, and we have willfully omitted
this aspect from this monograph. However, what has been unexpected is the extent of
post-transcriptional regulation of miRNAs that is illustrated in this book.
In the first chapter, René Ketting provides the background against which all of the
regulatory processes occur by revealing the complex biogenesis and function of miRNAs
and the related siRNAs. Akiko Hata and Brandi Davis then describe how SMAD proteins,
generally known for their function in controlling transcription, reveal another side in
regulating the processing of certain primary miRNA (pri-miRNA) transcripts by the
RNase Drosha. Drosha-mediated processing of pri-miRNAs into the short precursor
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