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OmicsBox Report: predict_coding_regions_results_transcripts
Jun 23, 2021
Predict Coding Regions Results
Input Data
Project name
Transcripts
Number of Sequences
442,208
TransDecoder Results
ORF Type
Complete
5' Partial
3' Partial
Internal
Sequences
46,767
25,394
15,637
38,268
Analysis Parameters
Parameter
Genetic Code
Minimum Protein Length
Strand Specific
Provide Gene-Transcript Relationships
Pfam Search
Retain Long ORFs Mode
Single Best Only
No Refine Starts
Top Longest ORFs for Training
Value
Universal
100
false
false
true
Dynamic
false
false
500
References
Haas BJ et al. (2013). De novo transcript sequence reconstruction from RNA-seq using the Trinity
platform for reference generation and analysis.
Nature protocols, 8
(8), 1494-512.
TransDecoder 5.5.0. Haas, BJ. and Papanicolaou, A. .
github.com/TransDecoder/TransDecoder/wiki
.
OmicsBox - Bioinformatics made easy. BioBam Bioinformatics (Version 2.0.10). March 3, 2019.
www.
biobam.com/omicsbox
.
Created by OmicsBox
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